Research

Funding: BLE, 812.500 EUR

Project Details:
Pig diseases and injuries occur in all housing systems. Intensive care or treatment does not always result in healing so that animals have to be killed to avoid further pain or suffering. The Animal Protection Act fundamentally stipulates the protection of animal lives and well-being. In the case of serious diseases or injuries, the deci-sion which subject of protection needs to be preferred is inevitable. For pig farmers, the decision concerning killing an animal is considerably challenging. The aim of this project is to define simply collectable and valid criteria with which the well-being of diseased pigs can be accurately assessed and a responsible, justified decision can be made regarding the killing. The criteria should define the earliest possible time-point in the course of a disease at which an impairment of the well-being for protecting life is no longer acceptable and emergency killing becomes inevitable. The decision regarding the killing requires in addition an ethical evaluation, which includes safeguarding interests of the pig owners. The project should depict the complex process of decision-making concerning the killing of diseased pigs exem-plary for relevant diseases or injuries. Diseased or injured pigs of various age groups should be monitored during the entire course of disease by means of clinical exam-inations and supplementary photo and video documentation in order to generate data sets, which make a decision regarding the killing understandable. Finally, prac-ticable, illness-/injury-specific criteria catalogues should be compiled for livestock pigs and integrated in a training concept. A further aim of the project is to analyse the reasons why pig farmers have wrongly assessed the health status of affected animals. The training concept should therefore directly deal with these reasons.

Cooperation Partners:

ISN Projekt GmbH, Damme

Funding: MWK über Universität Göttingen, 439.500 EUR

Project Details:
Das Projekt befasst sich mit der Auswirkung einer SARS-CoV-2-Infektion auf die Integrität der Epithelien im Respirationstrakt, mit besonderem Fokus auf die Spätfolgen der Infektion und die Regenerationsfähigkeit. Hierzu wird ein Langzeitversuch im Hamstermodell durchgeführt, in dessen Rahmen Daten für zwei Kernarbeitspakete generiert werden. Im ersten Arbeitspaket werden Auswirkungen auf das ziliierte Epithel in den luftleitenden Wegen untersucht, während das zweite Arbeitspaket sich mit der Schädigung und Regeneration des Alveolarepithels und der daraus resultierenden Folgen für die Lungenfunktion, den Sauerstoffaustausch und die Belastungstoleranz beschäftigt. Zur Auswertung kommt ein breites Spektrum von Analysemethoden zum Einsatz, inklusive funktioneller, pathologischer, virologischer und molekularbiologischer Methoden. Der holistische Ansatz wird unser Verständnis der Pathogenese der Spätfolgen einer COVID-19-Erkrankung maßgeblich erweitern und stellt eine wichtige Voraussetzung für die Entwicklung von Therapieansätzen dar.

Cooperation Partners:

Universität Göttingen

Funding: MWK über Universität Göttingen, 266.300 EUR

Project Details:
Das Mikrobiom der Lunge erfüllt, obwohl signifikant kleiner als das des Darms, eine bedeutende Funktion bei der Regulation der lokalen Immunantwort. Aktuelle Studien zeigten außerdem das SARS-CoV-2 Infektionen bei Betroffenen zu einer Veränderung in der Zusammensetzung des Lungenmikrobioms führen. Im Rahmen des Projektes soll untersucht werden, ob eine durch eine gezielte Manipulation des Lungenmikrobioms ausgelöste Verschiebung der Typ-1-Interferon-Reaktivität in der Lunge die systemische Anfälligkeit für eine SARS-CoV-2-Infektion beeinflusst. Während in der ersten Phase eine genauere Untersuchung der Rolle des Lungenmikrobioms bei der Regulation der homöostatischen Immunantwort erfolgt, wird in der zweiten Phase des Projektes darauf aufbauend die Rolle der Lungenmikrobiota bei der Regulierung der lokalen und systemischen Immunantwort im Rahmen einer SARS-CoV-2-Infektion untersucht. Wenn die in diesen Experimenten gewonnen Daten darauf hindeuten, dass Veränderungen im Lungenmikrobiom einen Einfluss auf den Verlauf der Infektion haben, soll in einem letzten Experiment der Einsatz von Probiotika als pharmakologische Behandlung von SARS-CoV-2-Infektion erprobt werden.

Cooperation Partners:

Universität Göttingen

Funding: DFG, 255.550 EUR

Project Details:
Bovine Viral Diarrhea/ Mucosal Disease (BVD/ MD) is an economically important notifiable disease of cattle. The causative agent, BVD virus (BVDV), is a plus strand RNA virus of the family Flaviviridae, genus Pestivirus. BVDV is known to enter oronasally and through the respiratory tract, from where it spreads to various organs and tissues. The initial stage of infection is poorly understood. In the context of preliminary work it was shown that non-differentiated polarized respiratory epithelial cells are highly susceptible to apical and basolateral infection with BVDV, but virus release occurs only via the apical side of the cells. Thus, it remains unknown how pestiviruses cross the barrier of the airway epithelium. However, it is well established that BVDV and other pestiviruses have a strong tropism for immune cells. Therefore, an important goal of this project is to explore the pathway by which BVDV crosses the barrier of the respiratory epithelium and spreads from there to immune cells.
In the first part of the project, the infection of airway epithelial cells (tracheal/bronchial epithelial cells) will be investigated. Two cell culture systems established at the Institute of Virology are available for the analysis of end-differentiated cells: Air-liquid-interface (ALI) cultures and precision lung slices (PCLS). Subsequently, cells that have not yet completed differentiation or cells that are in the regeneration phase after epithelial injury will be examined. Finally, we will analyze whether BVDV can overcome the epithelial barrier in a paracellular manner by exploiting leaky junctions between cells. To find out whether the different infection characteristics in the different culture systems and under the various infection conditions depending on the degree of differentiation can be correlated or explained with the presence of the cellular receptor, the expression of the receptor for BVDV, CD46, will be analyzed. For the detection of CD46 a monoclonal antibody is available, which was produced at the Institute of Virology. Another focus will be studies on the infection of macrophages. Co-cultures of macrophages and airway epithelial cells will be established to find out whether macrophage infection can be used to overcome the epithelial barrier.
Other interesting perspectives for future projects include the role of cellular innate immunity for respiratory epithelial infection with BVDV, and viral-viral or viral-bacterial co-infections.

Funding: MWK über Universität Göttingen, 29.423 EUR

Project Details:
Schwere COVID-19-Krankheitsfälle sind durch das Auftreten einer schweren Lungenentzündung charakterisiert, die häufig einen Krankenhausaufenthalt erfordern. Bis zu einem Drittel der hospitalisierten Patienten entwickeln kritische Komplikationen, wie einen diffusen Alveolarschaden, welcher zum akuten Atemnotsyndroms (ARDS) führt. Ein detailliertes Verständnis der komplexen Pathogenese und der daraus resultierenden Krankheitskomplikationen ist dringend erforderlich, um wirksame Behandlungsstrategien für die SARS-CoV-2-Infektion zu entwickeln. Mehrere erfolgreiche Präventionsstrategien wie Impfstoffe wurden entwickelt und für ihre Anwendung beim Menschen zugelassen. Wir sind jedoch noch weit von einer Eindämmung der Krankheit entfernt und könnten mit dem vermehrten Auftreten von Virusvarianten vor zusätzlichen Herausforderungen stehen. Zwar ist bereits viel über die Pathogenese und Behandlung der akuten COVID-19 Erkrankung bekannt, jedoch wissen wir immer noch sehr wenig über die potentiellen Langzeitfolgen. Es wird immer deutlicher, dass eine protrahierte Genesung ein häufiges Merkmal COVID-19 ist, ein Phänomen, das allgemein als "Long-COVID" oder Post-COVID-Syndrom bezeichnet wird. 30-60% der Personen leiden nach der Genesung von einer akuten Virusinfektion an anhaltenden Symptomen wie Müdigkeit, Kurzatmigkeit und verringerter Belastbarkeit. Dieses Projekt soll dazu beitragen, die Mechanismen von "Long-COVID" besser zu verstehen und daraus neue Behandlungsstrategien abzuleiten.

Funding: MWK über Universität Göttingen, 24.805 EUR

Project Details:
Die Zusammensetzung und Reaktivität des lungenspezifischen Immunsystems wird durch verschiedene Mechanismen gesteuert. Wichtig ist hierbei insbesondere die körpereigene, genetische Disposition des Individuums. Genetische Varianten sind wichtige Determinanten der kindlichen Asthma- und Virusinfektionsanfälligkeit . Aber auch äußere Faktoren wie Infektionen, Rauchen oder Umweltgifte können das Immunsystem des Lungengewebes prägen. Neuste Studien zeigen, dass auch dem Lungenmikrobiom eine bedeutende Rolle bei der Regulierung und Aktivität des Lungenimmunsystems zukommt. Das Lungenmikrobiom wurde spät entdeckt, da man lange Zeit davon ausging, dass die Lunge eine pathogenfreie, sterile Umgebung darstellt. In diesem Projekt soll der Einfluss der Lungemikrobioms auf die Schwere einer SARS-CoV-2 Infektion untersucht werden.

Funding: DFG, 240.000 EUR

Project Details:
Wild animals can serve as reservoir for causative agents of important livestock diseases including African and Classical swine fever, Foot and mouth disease, Bluetongue as well as for zoonotic viruses like SARS coronaviruses, Rabies virus, and Hepatitis E virus. In recent years, a growing number of emerging viruses were identified in domestic and wild animals. These include novel bunyaviruses, reoviruses, astroviruses, birnaviruses, circoviruses and parvoviruses from wild boar detected during the first funding period of VIPER. Another example is the identification of pestiviruses from non-ungulate hosts including rodents, bats, pangolin, and a whale. Further characterization of these newly identified viruses, including studies on viral replication, innate immune responses and other virus-host interactions, depends on successful virus isolation and propagation in tissue culture cells. Preliminary work revealed that the whale pestivirus can efficiently infect swine kidney cells and viral antigen is detectable by a monoclonal antibody. However, for several other viruses virus isolation was not successful. The recent establishment of airway and intestinal epithelial cells organoid cultures from pigs and cattle at our institute can be very useful for isolation and subsequent characterization of selected novel viruses. It is expected that the results of this project will enhance our understanding of viral evolution, origin, cross species transmission and virus-host interactions of human and animal viruses, and thus improve outbreak preparedness and infectious disease control.

Results:

https://www.mdpi.com/1999-4915/17/1/107

Funding: Alexander von Humboldt-Stiftung, 51.831 EUR

Project Details:
Antimicrobial resistance (AMR) is a global challenge worldwide, and generally results from consumption of antimicrobials. Antimicrobial use (AMU) in animal production is part of these processes and has been recognized as a source of global burden of AMR. Surveillance of veterinary AMU and AMR and its reduction is one of the strategic objectives of many regional and global initiatives on antimicrobial resistance crisis. Since, the resistance to critically important antimicrobials like colistin, particularly due to mobile colistin resistance gene (mcr-1), has already been reported in Pakistan from commercial broilers, wild birds and human. Therefore, data on antimicrobial usage and its association with resistance should be prioritized in food animals. Although Pakistan?s National Action Plan on AMR urged to monitor and reduce antimicrobials use and resistance in animals, little effort has been done to curb AMR in food animals. The objective of this project is to quantify AMU in commercial broiler farms in Pakistan and its association with the emergence of AMR in commensal E. coli isolates from broilers. The proposed study will fill the important knowledge gap on the AMU of critical importance antimicrobials in broilers farming, phenotypic antibiotic resistance and genomic characteristics of multidrug resistant E. coli using next generation sequencing approach. The association between AMU and AMR will be determined using statistical approaches. Our work will be an important contribution toward understanding the interplay between AMU and AMR at farms-level in Pakistan and other low- and middle-income countries with comparable farming practices.
This project comes under One-Health remit on antimicrobial resistance and aligns perfectly with the work at University of Veterinary Medicine, Foundation, Hannover which has been also designated as the WHO Collaborating Centre for Research and Training for Health at the Human-Animal-Environment Interface.

Results:

Umair M, Mohsin M, Sönksen UW, Walsh TR, Kreienbrock L, Laxminarayan R. Meas-uring Antimicrobial Use Needs Global Harmonization. Glob Chall. 2021 Jun 10;5(10):2100017. doi: 10.1002/gch2.202100017.

 

Mohsin M, Farooq U, Hartmann M, Brogden S, Kreienbrock L, Stoffregen J. Case Study: Using a Shared International Database to Document Veterinary Consumption of Antibiotics in Pakistan. Antibiotics (Basel). 2023 Feb 15;12(2):394. doi: 10.3390/antibiotics12020394.

Cooperation Partners:

Institute of Microbiology, University of Agriculture Faisalabad, Pakistan

Funding: EIP_Agri, ELER_Fonds Hier investiert Europa in die ländlichen Gebiete mit der Maßnahme: Europäische Innovationspartnerschaft Mit dieser Maßnahme wird die Zusammenarbeit zwischen Landwirtschaft, Ernährungswirtschaft und Wissenschaft unterstützt. Ziel ist die Durchführung von Projekten, die zu Innovationen und einer Stärkung der Wettbewerbsfähigkeit in der Landwirtschaft führen., 482.195 EUR

Project Details:
The project "DEALS- Decontamination with alternative methods as a hurdle concept on carcasses and cuts of pork, broiler and turkey" investigates the combined application of several innovative decontamination methods in connection with meat production. The aim is to reduce the number of carcasses to be discarded (resource conservation) and to improve or ensure the food safety of the meat (consumer protection). For this purpose, plasma water as well as UV-C treatment, the application of starter cultures and the newer application of plasma water in the form of EWNS (engineeres water nano structures) are to be used. Step by step these decontamination methods will be applied in vitro on pure cultures of relevant microorganisms, on carcass surfaces of pigs, broilers and turkeys, and finally on meat cuts. Within the project, a prototype for the combined application of the methods is to be developed in cooperation with the HAWK, which has already proven itself in another EiP project. The close exchange with the OG partners from the downstream primary production (slaughterhouses) is particularly essential for the practical implementation of the ideas.

Cooperation Partners:

HAWK- Hochschule für Angewandte Wissenschaft und Kunst Hildesheim. Göttingen, Holzminden;

Schlachtbetrieb Mario Klos;

Lohmann & Co.AG

Funding: EU, 955.230 EUR

Project Details:
It is widely recognised that noise entering the underwater environment from shipping and other human activities can disturb and harm aquatic animals. Studies have already shown these disturbance effects, while other research has suggested ways to reduce some of the noise generated by shipping. However, there are still gaps in our knowledge and understanding of how underwater noise can affect individual animals and entire populations.

This is now set to change with the SATURN consortium, which for the first time brings together leading European experts in bioacoustics, veterinary medicine, population biology, plus naval architecture and engineering in an EU-funded project. Key issues include:
- Identifying sounds that are most harmful to aquatic species and how they are generated and propagated;
- What are the short-term and cumulative long-term negative effects of noise from ships and boats on aquatic species in rivers and the sea;
- What are the most promising options for measuring and reducing the negative impacts of ship noise that can be applied to current and future ships.

Prof. Prof. h. c. Dr. Ursula Siebert, Director of the Institute for Terrestrial and Aquatic Wildlife Research at the TiHo, is the leader of the biological working group in this consortium, which investigates the influence of underwater noise on the behaviour, health and energy balance of aquatic organisms. Another important aspect supported by ITAW is public relations and communication.