Overview of research projects

Funding: DFG, 466.350 EUR

Project Details:
The objective of this research work is to evaluate the genetic architecture of body size using a pig model in a multi-omics approach. It particularly aims at in-depth investigations of interrelations of size determining variants, transcriptional variation among miniature and large size as well as the identification of topologically associated domains (TADs) and putative enhancers involved in body size determination. This study is particularly focusing on the elucidation of the regulatory landscape in pigs and its essential role in the determination of body size.Initial analyses of whole genome sequencing data of miniature versus standard sized breeds/populations are supposed to identify potential signatures of selection reflecting high selection pressures in both directions- miniature and large size- harboring variants causative for the miniaturization across-breeds. Subsequently, I aim at detecting chromatin interactions defined as TADs and putative enhancer elements in the region of these variants involved in size-determination by targeting high intensity peaks of chromatin interactions from Hi-C analysis as well as high histone modification levels associated with active enhancers (H3K27ac and H3K4me1) from ChIP-seq in the growth plates of the long bones. These marks of active DNA sequences will then be linked to transcriptional variation in-between miniature and large pigs. An in vitro model will be established for further functional validation.This will be the first study investigating genomic and functional effects on body size specifically targeting growth plates in pigs. Based on these data, we aim at increasing the knowledge of biological processes in mammals regulating growth and determining the size of a body. This profound understanding of body size development will not only be of high importance for livestock breeding but will also provide better understanding of growth biology, developmental genetics and disturbances in growth processes.

Results:

https://link.springer.com/article/10.1186/s12864-022-08801-4

Cooperation Partners:

Prof. Stefan Mundlos, Max-Planck-Institut für Molekulare Genetik, Berlin

Project Details:
Das Projekt untersucht die Pathogenese der Rifttalfieberenzephalitis im Mausmodell. Rifttalfieber ist eine virale Zoonose, die in seltenen, aber schweren, teils fatalen Fällen zu einer Enzephalitis in Humanpatienten führt. Wichtige Details zu deren Pathogenese, insbesondere der Infektionsweg, die intrazerebrale Virusausbreitung und die Rolle der (intrazerebralen) Immunantwort sind bisher nicht vollständig geklärt. Das Projekt erforscht den Verlauf der Rifttalfieberenzephalitis nach intranasaler Infektion bei verschiedenen immundefizienten Knockoutmäusen im Vergleich mit immunkompetenten Wildtypmäusen, um die genaue Rolle verschiedener Immunzellen in der Pathogenese zu charakterisieren.

Results:

https://pubmed.ncbi.nlm.nih.gov/36293352/ (2022 Oct 18)

Funding: Bundesanstalt für Landwirtschaft und Ernährung, 128.383 EUR

Project Details:
In this project, the focus is on analysing the interrelationships between animal welfare and environmental protection in dairy farming. The aim of the project is to consider the three factors "low emissions, high walking comfort and long-lived cows" in a three-year study phase in the Chamber of Agriculture's trial barn at Haus Riswick.

Cooperation Partners:

- Rheinische Friedrich-Wilhelms-Universität Bonn, Institut für Landtechnik

- Landwirtschaftskammer Nordrhein-Westfalen, Haus Riswick

Funding: EU, 1.234.225 EUR

Project Details:
Bewertung von rational konzipierten Influenza-Impfstoffen

Funding: EU Kommission (imi), 337.500 EUR

Project Details:
The objective of WP3 is to combine the broad expertise of consortium partners in drug discovery in order to identify small molecule candidate drugs to fight coronaviruses.
To effectively deliver drug candidates, WP3 is interacting closely with WP1 and WP2 to identify and select potential starting points for further development based on clearly defined progression criteria. A screening cascade for (phenotypic) hit ID has been implemented and executed. In addition, a coordinated AI-platform and analysis of targets for their druggability is being finalized to facilitate the selection of potential starting points for chemistry. The medicinal chemistry efforts have not yet been initiated as the review and selection of potential starting points from the first wave of hit identification is still ongoing.
In addition to the Hit selection criteria to move forward into Hit to Lead (H2L), WP3 contributors have already prepared for the next steps by defining the initial progression criteria for hits, leads and optimized lead compounds. In addition, a screening cascade for H2L and lead optimization (LO) is proposed, including the flow for the ADMET-PK related assays. The aim is to work towards the predefined target product profiles (TPPs) which have also been discussed within WP3 and are close to finalisation.

Funding: DFG Ra 50/23-1, 2, Houston Zoo, 344.938 EUR

Project Details:
Drivers of speciation are diverse and complex, ranging from large-scale geomorphological processes like the formation of mountains or rivers to small-scale mechanisms like intra-specific ecological plasticity, divergent habitat choice or colonization potential. Due to the lack of appropriate model regions and species, previous studies typically focused on single or dual factor approaches without investigating interactions between drivers. We propose a highly suitable model region in eastern Madagascar to better explore the principal evolutionary processes driving species diversification and their interactions. The proposed study region is traversed by several large rivers that differ greatly in age. The geology and vegetation is rather uniform with similar macro-habitats ranging from tropical lowland to highland rain forest along an elevational east-west gradient. The area harbors an outstanding lemur species richness of which three genera are chosen as models for this project. Thirteen model species belong to two exceptionally speciose genera, Lepilemur and Microcebus, in contrast to the less speciose but ecologically plastic genus of woolly lemurs (Avahi). Rivers and mountains are assumed to have played a crucial role during speciation of lemurs, providing refugia during Pleistocene glaciation events which supposedly facilitated speciation. We propose that river chronology is an additional major co-variate shaping diversification processes, colonization pathways and phylogeographic history of species. We aim to combine geomorphological reconstructions of relative river ages, (micro-)habitat characterizations, ecological niche modeling techniques and RADseq-based phylogeographic reconstructions of colonization routes to investigate the role and interactions of various drivers of speciation including chronology of riverine barriers, vagility, altitudinal tolerance, body size, and ecological plasticity. This interdisciplinary project will thereby illuminate the relative importance of various extrinsic (e.g., geomorphology, habitat) and intrinsic factors (e.g., ecological plasticity, vagility) for the evolutionary diversification of animal populations.

Results:

Tiley, G.P.*; van Elst, T.*; Teixeira, H.; Schüßler, D.; Salmona, J.; Blanco, M.B.; Ralison, J.M.; Randrianambinina, B.; Rasoloarison, R.M.; Stahlke, A.R.; Hohenlohe, P.A.; Chikhi, L.; Louis, E.E.; Radespiel, U.; Yoder, A.D. (2022): Population genomic structure in Goodman?s mouse lemur reveals long-standing separation of Madagascar?s Central Highlands and eastern rainforests. Mol. Ecol., 31, 4901-4918. https://doi.org/10.1111/mec.16632 (*: shared first authors)

 

Schüßler, D.#; Blanco, M.B.#; Salmona, J.; Poelstra, J.; Andriambeloson, J.B.; Miller, A.; Randrianambinina, B.; Rasolofoson, D.W.; Mantilla-Contreras, J.; Chikhi, L.; Louis, E.E. Jr., Yoder, A.D.; Radespiel, U. (2020): Ecology and morphology of mouse lemurs (Microcebus spp.) in a hotspot of microendemism in northeastern Madagascar, with the description of a new species. Am. J. of Primatol., e23180. https://doi.org/10.1002/ajp.23180 (#: joint first authors)

 

Poelstra, J.#; Salmona, J. #; Tiley, G.P. #; Schüßler, D.; Blanco, M.B.; Andriambeloson, J.B.; Manzi, S.; Campbell, C.R.; Bouchez, O.; Etter, P.D.; Iribar, A.; Hohenlohe, P.A.; Hunnicutt, K.E.; Johnson, E.A.; Kappeler P.M.; Larsen, P.A.; Ralison, J.M.; Randrianambinina, B.; Rasoloarison, R.M.; Rasolofoson, D.W.; Stahlke, A.R.; Weisrock, D.; Williams, R.C.; Chikhi, L.; Louis Jr., E.E.; Radespiel, U.* Yoder, A.D.*; (2020): Cryptic patterns of speciation in cryptic primates: microendemic mouse lemurs and the multispecies coalescent. Systematic Biology, syaa053. https://doi.org/10.1093/sysbio/syaa053 (#: joint first authors, *: joint senior authors)

Cooperation Partners:

Prof. Dr. M. Sauerwein, Universität Hildesheim

Dr. Jordi Salmona, Universität Toulouse, Frankreich

Dr. Lounès Chikhi, IGC, Oeiras, Portugal

Pr. Dr. Jonah Ratsimbazafy, Universität Antananarivo, Madagaskar

Pr. Dr. Solofonirina Rasoloharijaona, Universität Mahajanga, Madagaskar

Dr. Romule Rakotondravony, Universität Mahajanga, Madagaskar

Dominik Schüßler, Apl.Prof. Dr. Jasmin Mantilla-Contreras, Universität Hildesheim

Funding: Pharmaceutical sector, 230.000 EUR

Project Details:
therapy development for neurodegenerative diseases

Funding: DFG Collaborative Research Centre (SFB) 1270 (2017-2025) ?Electrically Active Implants? ELAINE.

Project Details:
Der dtsz Hamster ist ein hervorragend charakterisiertes Modell für die Dystonie, der Gendefekt ist jedoch nicht bekannt. Eine Identifikation des Effektes ist wichtig zum Verständnis der Pathophysiologie der Dystonie und zur Therapieentwicklung. In diesem Projekt werden Genom und Transkriptom des Modells sequenziert und auf Gendefekte hin untersucht.

Funding: Studienstiftung des Deutschen Volkes

Project Details:
We investigate the pathophysiological pathways underlying post-COVID-19 syndrome with the goal to develop biomarkers and rational therapeutic intervention.

Cooperation Partners:

Prof. Dr. Gülsah Gabriel (TiHo, HPI Hamburg), Prof. Dr. Günter Höglinger (Neurology, MHH), Prof. Dr. Ulrich Kalinke (TWINCORE Hannover)

Project Details:
-