Overview of research projects

Funding: DFG, 255.550 EUR

Project Details:
Bovine Viral Diarrhea/ Mucosal Disease (BVD/ MD) is an economically important notifiable disease of cattle. The causative agent, BVD virus (BVDV), is a plus strand RNA virus of the family Flaviviridae, genus Pestivirus. BVDV is known to enter oronasally and through the respiratory tract, from where it spreads to various organs and tissues. The initial stage of infection is poorly understood. In the context of preliminary work it was shown that non-differentiated polarized respiratory epithelial cells are highly susceptible to apical and basolateral infection with BVDV, but virus release occurs only via the apical side of the cells. Thus, it remains unknown how pestiviruses cross the barrier of the airway epithelium. However, it is well established that BVDV and other pestiviruses have a strong tropism for immune cells. Therefore, an important goal of this project is to explore the pathway by which BVDV crosses the barrier of the respiratory epithelium and spreads from there to immune cells.
In the first part of the project, the infection of airway epithelial cells (tracheal/bronchial epithelial cells) will be investigated. Two cell culture systems established at the Institute of Virology are available for the analysis of end-differentiated cells: Air-liquid-interface (ALI) cultures and precision lung slices (PCLS). Subsequently, cells that have not yet completed differentiation or cells that are in the regeneration phase after epithelial injury will be examined. Finally, we will analyze whether BVDV can overcome the epithelial barrier in a paracellular manner by exploiting leaky junctions between cells. To find out whether the different infection characteristics in the different culture systems and under the various infection conditions depending on the degree of differentiation can be correlated or explained with the presence of the cellular receptor, the expression of the receptor for BVDV, CD46, will be analyzed. For the detection of CD46 a monoclonal antibody is available, which was produced at the Institute of Virology. Another focus will be studies on the infection of macrophages. Co-cultures of macrophages and airway epithelial cells will be established to find out whether macrophage infection can be used to overcome the epithelial barrier.
Other interesting perspectives for future projects include the role of cellular innate immunity for respiratory epithelial infection with BVDV, and viral-viral or viral-bacterial co-infections.

Funding: MWK über Universität Göttingen, 29.423 EUR

Project Details:
Schwere COVID-19-Krankheitsfälle sind durch das Auftreten einer schweren Lungenentzündung charakterisiert, die häufig einen Krankenhausaufenthalt erfordern. Bis zu einem Drittel der hospitalisierten Patienten entwickeln kritische Komplikationen, wie einen diffusen Alveolarschaden, welcher zum akuten Atemnotsyndroms (ARDS) führt. Ein detailliertes Verständnis der komplexen Pathogenese und der daraus resultierenden Krankheitskomplikationen ist dringend erforderlich, um wirksame Behandlungsstrategien für die SARS-CoV-2-Infektion zu entwickeln. Mehrere erfolgreiche Präventionsstrategien wie Impfstoffe wurden entwickelt und für ihre Anwendung beim Menschen zugelassen. Wir sind jedoch noch weit von einer Eindämmung der Krankheit entfernt und könnten mit dem vermehrten Auftreten von Virusvarianten vor zusätzlichen Herausforderungen stehen. Zwar ist bereits viel über die Pathogenese und Behandlung der akuten COVID-19 Erkrankung bekannt, jedoch wissen wir immer noch sehr wenig über die potentiellen Langzeitfolgen. Es wird immer deutlicher, dass eine protrahierte Genesung ein häufiges Merkmal COVID-19 ist, ein Phänomen, das allgemein als "Long-COVID" oder Post-COVID-Syndrom bezeichnet wird. 30-60% der Personen leiden nach der Genesung von einer akuten Virusinfektion an anhaltenden Symptomen wie Müdigkeit, Kurzatmigkeit und verringerter Belastbarkeit. Dieses Projekt soll dazu beitragen, die Mechanismen von "Long-COVID" besser zu verstehen und daraus neue Behandlungsstrategien abzuleiten.

Funding: MWK über Universität Göttingen, 24.805 EUR

Project Details:
Die Zusammensetzung und Reaktivität des lungenspezifischen Immunsystems wird durch verschiedene Mechanismen gesteuert. Wichtig ist hierbei insbesondere die körpereigene, genetische Disposition des Individuums. Genetische Varianten sind wichtige Determinanten der kindlichen Asthma- und Virusinfektionsanfälligkeit . Aber auch äußere Faktoren wie Infektionen, Rauchen oder Umweltgifte können das Immunsystem des Lungengewebes prägen. Neuste Studien zeigen, dass auch dem Lungenmikrobiom eine bedeutende Rolle bei der Regulierung und Aktivität des Lungenimmunsystems zukommt. Das Lungenmikrobiom wurde spät entdeckt, da man lange Zeit davon ausging, dass die Lunge eine pathogenfreie, sterile Umgebung darstellt. In diesem Projekt soll der Einfluss der Lungemikrobioms auf die Schwere einer SARS-CoV-2 Infektion untersucht werden.

Funding: Alexander von Humboldt-Stiftung, 51.831 EUR

Project Details:
Antimicrobial resistance (AMR) is a global challenge worldwide, and generally results from consumption of antimicrobials. Antimicrobial use (AMU) in animal production is part of these processes and has been recognized as a source of global burden of AMR. Surveillance of veterinary AMU and AMR and its reduction is one of the strategic objectives of many regional and global initiatives on antimicrobial resistance crisis. Since, the resistance to critically important antimicrobials like colistin, particularly due to mobile colistin resistance gene (mcr-1), has already been reported in Pakistan from commercial broilers, wild birds and human. Therefore, data on antimicrobial usage and its association with resistance should be prioritized in food animals. Although Pakistan?s National Action Plan on AMR urged to monitor and reduce antimicrobials use and resistance in animals, little effort has been done to curb AMR in food animals. The objective of this project is to quantify AMU in commercial broiler farms in Pakistan and its association with the emergence of AMR in commensal E. coli isolates from broilers. The proposed study will fill the important knowledge gap on the AMU of critical importance antimicrobials in broilers farming, phenotypic antibiotic resistance and genomic characteristics of multidrug resistant E. coli using next generation sequencing approach. The association between AMU and AMR will be determined using statistical approaches. Our work will be an important contribution toward understanding the interplay between AMU and AMR at farms-level in Pakistan and other low- and middle-income countries with comparable farming practices.
This project comes under One-Health remit on antimicrobial resistance and aligns perfectly with the work at University of Veterinary Medicine, Foundation, Hannover which has been also designated as the WHO Collaborating Centre for Research and Training for Health at the Human-Animal-Environment Interface.

Results:

Umair M, Mohsin M, Sönksen UW, Walsh TR, Kreienbrock L, Laxminarayan R. Meas-uring Antimicrobial Use Needs Global Harmonization. Glob Chall. 2021 Jun 10;5(10):2100017. doi: 10.1002/gch2.202100017.

 

Mohsin M, Farooq U, Hartmann M, Brogden S, Kreienbrock L, Stoffregen J. Case Study: Using a Shared International Database to Document Veterinary Consumption of Antibiotics in Pakistan. Antibiotics (Basel). 2023 Feb 15;12(2):394. doi: 10.3390/antibiotics12020394.

Cooperation Partners:

Institute of Microbiology, University of Agriculture Faisalabad, Pakistan

Funding: EIP_Agri, ELER_Fonds Hier investiert Europa in die ländlichen Gebiete mit der Maßnahme: Europäische Innovationspartnerschaft Mit dieser Maßnahme wird die Zusammenarbeit zwischen Landwirtschaft, Ernährungswirtschaft und Wissenschaft unterstützt. Ziel ist die Durchführung von Projekten, die zu Innovationen und einer Stärkung der Wettbewerbsfähigkeit in der Landwirtschaft führen., 482.195 EUR

Project Details:
The project "DEALS- Decontamination with alternative methods as a hurdle concept on carcasses and cuts of pork, broiler and turkey" investigates the combined application of several innovative decontamination methods in connection with meat production. The aim is to reduce the number of carcasses to be discarded (resource conservation) and to improve or ensure the food safety of the meat (consumer protection). For this purpose, plasma water as well as UV-C treatment, the application of starter cultures and the newer application of plasma water in the form of EWNS (engineeres water nano structures) are to be used. Step by step these decontamination methods will be applied in vitro on pure cultures of relevant microorganisms, on carcass surfaces of pigs, broilers and turkeys, and finally on meat cuts. Within the project, a prototype for the combined application of the methods is to be developed in cooperation with the HAWK, which has already proven itself in another EiP project. The close exchange with the OG partners from the downstream primary production (slaughterhouses) is particularly essential for the practical implementation of the ideas.

Cooperation Partners:

HAWK- Hochschule für Angewandte Wissenschaft und Kunst Hildesheim. Göttingen, Holzminden;

Schlachtbetrieb Mario Klos;

Lohmann & Co.AG

Funding: DFG, 491.000 EUR

Project Details:
The aim of the project is to analyse host-parasite interactions between the Fasciola hepatica as parasite and dairy cows as host, taking into account the genome of both interaction partners. Until now, studies on endoparasite resistance have focused exclusively on the genome of the host or the parasite, without considering genotype-genotype interactions between these two players. Therefore, for the first time, interactions will be modelled considering bovine genotypes (Gh) and F. hepatica genotypes (Gp).

Results:

May, K., Hecker, A.S., Strube, C., Tong, Y., König, S. (2025) Genetic parameters and single-step genome-wide association analysis for trematode (Fasciola hepatica and Calicophoron / Paramphistomum spp.) infections in German dairy cows. Infection, Genetics and Evolution 128, 105712

 

Hecker, A.S., Raulf, M.-K., König, S., Knubben-Schweizer, G., Wenzel, C., May, K., Strube, C. (2024) In-herd prevalence of Fasciola hepatica and Calicophoron/Paramphistomum spp. infections in German dairy cows with comparison of two coproscopical methods and establishment of real-time pyrosequencing for rumen fluke species differentiation. Veterinary Parasitology 327, 110142

 

May, K., Hecker, A.S., König, S., Strube, C. (2024) Helminth co-infections have no additive detrimental impact on milk yield and milk quality compared to mono-infections in German dairy cows. Parasites & Vectors 17, 398

Cooperation Partners:

Dr. Dr. Katharina May, Justus-Liebig-Universität Gießen

Funding: MWK über Uni Göttingen, 8.400.000 EUR

Project Details:
SARS-CoV-2 (Severe Acute Respiratory Syndrome Coronavirus Type 2) is the causative agent of COVID-19. The course of the COVID-19 pandemic so far has emphatically shown that a coordinated bundling of interdisciplinary and complementary expertise is necessary in order to decode the diverse aspects of the biology, pathology and epidemiology of SARS-CoV-2 and to use the knowledge gained clinically for the treatment of patients as well as for modeling the course of infection in the population. In order to be able to provide and implement such a holistic approach, the federal state of Lower Saxony offers ideal conditions with its internationally renowned science locations. We are therefore applying for financial support for collaborative research to set up a COVID-19 research network in the state of Lower Saxony (COFONI).

Project Details:
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Funding: Nordic Research Council (NRC), 49.000 EUR

Project Details:
The retreat of sea ice and the melting and retreat of tidewater glaciers are particularly visible signs of the changes taking place in the Arctic due to global warming. The deterioration of these two physical features of Arctic marine systems is occurring faster in the northern Barents Sea than elsewhere in the circumpolar Arctic, making the Norwegian High Arctic an indicator of climate change in the Arctic region as a whole. The changes will undoubtedly have profound effects on marine ecosystems in the High Arctic and consequences for endemic Arctic marine mammal species.
The ARK research programme will use a variety of data time series (occurrence, ecology, diet, contaminant levels, health parameters, infectious diseases, trophic interactions, etc.) to quantitatively assess different hypotheses on climate change impacts on Arctic marine mammals: 1) Habitat decline will lead to declines in ice-dependent species, changes in distribution patterns and, in the long term, species extinction. 2) Endemic species will increasingly compete with temperate species, which are expanding their habitats. 3) Exposure to new pathogens and increased levels of pollutants will have a negative impact on endemic species. 4) Atlantification of food webs will negatively impact Arctic species and affect the entire Arctic ecosystem.
Within the ARK project, the Kongsfjord, on the west coast of Spitsbergen, will be used in a case-study approach to investigate changes in the ecosystem, apply physical-biochemical food web models and complex risk analyses to make predictions and provide management information.

Cooperation Partners:

Kooperationsprojekt mit dem Norwegian Polar Institute, Tromsø

Project Details:
Diagnostic imaging of the equine cervical and thoracic spine has become increasingly important in recent years. The focus is on radiographic examinations, but also nuclear medicine and computed tomography are commonly used to address various clinical questions.
This project deals with the clinical relevance of radiographic and nuclear scintigraphy findings of the thoracic spine in relation to back pain and rideability problems as well as the diagnostic value of computed tomography and computed tomographic myelography in horses with spinal ataxia.