Sommersemester 2024
Datenanalyse und Bioinformatik mit R, deutsch (Sommer)
K. Jung
weekly Lecture, 28 hours, max. 25 participantsWed 17.04.24 - Wed 17.07.24, 16:15 - 17:45
- Introduction to R programming; data structures and data processing in R
- statistical methods for the analysis of scientific experiments (statistical testing, regression, analysis of variance, correlation analysis)
- basics of bioinformatics (sequence alignment, phylogenetics, analysis of molecular high-throughput data from microarray and NGS experiments, normalization, visualization multiple testing, gene-set enrichment machine learning, artificial neurla networks)
- Einführung in die R-Programmierung, Datenstrukturen & Datenprozessierung in R
- Statistische Verfahren für die Auswertung naturwissenschaftlicher Experimente (Statistisches Testen, Regressions- und Varianzanalytische Verfahren, Korrelationsanalyse),
- Grundlagen der Bioinformatik in R (Sequenzalignment, Phylogenetische Analysen, Analyse molekularer Hochdurchsatzdaten aus Microarray- oder Sequencing-Experimenten, Normalisierung, Visualisierung, Multiples Testen, Gene-set Enrichment Analysen, Maschinelles Lernen)
Institut für Mikrobiologie Zentrum für Infektionsmedizin
Institut für Parasitologie Zentrum für Infektionsmedizin
Institut für Pathologie
Institut für Virologie
Institut für Tiergenomik
Institut für Biochemie
Institut für Immunologie
Institut für Terrestrische und Aquatische Wildtierforschung (Büsum)
Research Center for Emerging Infections and Zoonoses
Außenstelle für Epidemiologie (Bakum)
Individual lab course
Lecturers of the HGNI
block Workshop, 8 hoursTo be announced
This course aims to provide hands-on learning in labs with focus on specific state-of-the-art techniques that are relevant or of individual interest for the PhD student. Experienced lecturers and scientists provide the benefits of live, in-person training. Extensive training is provided by the labs.
This course thereby also stimulates cooperations among scientists between different HGNI-institutions or cooperating labs.
The students gain experience on specific state-of-the-art techniques, which are relevant for infection research. The course includes
? background knowledge about the principles of the technique
? practical hands-on-training including trouble shooting
? user examples on scientific application of the respective technique
Institut für Mikrobiologie Zentrum für Infektionsmedizin
Institut für Parasitologie Zentrum für Infektionsmedizin
Institut für Pathologie
Institut für Virologie
Institut für Tiergenomik
Institut für Biochemie
Institut für Immunologie
Institut für Terrestrische und Aquatische Wildtierforschung (Büsum)
Research Center for Emerging Infections and Zoonoses
Außenstelle für Epidemiologie (Bakum)
Workgroup seminar and journal club
K. Jung and Research Staff
weekly Group Session, 14 hours, max. 20 participantsWed 17.04.24 - Wed 17.07.24, 13:00 - 14:00
Presentation and discussions on the following topics:
* analysis pipelines for NGS data
* analysis pipelines for high-dimensional expression data
* machine learning approaches
* software presentations
* status reports of PhD projects
* presentation of new literature/publications
Metzger
single Lecture, 2 hours, max. 10 participantsWed 15.05.24, 14:15 - 15:45
This course will provide basic knowledge of NGS- from bench to computer work. After a thorough introduction, specific questions can be discussed.