Publications by VIPER students

  • Neurotrophic effects of GM1 ganglioside, NGF, and FGF2 on canine dorsal root ganglia neurons in vitro.
    S. Schwarz, A. Lehmbecker, W. Tongtako, K. Hahn, Y. Wang, F. Felmy, I. Zdora, G. Brogden, K. Branitzki-Heinemann, M. von Köckritz-Blickwede, W. Baumgärtner & I. Gerhauser. Scientific Reports (2020).
    https://www.nature.com/articles/s41598-020-61852-z
  • Tick-Borne Encephalitis Virus: A Quest for Better Vaccines against a Virus on the Rise.
  • M. Kubinski, J. Beicht, T. Gerlach, A. Volz, G. Sutter & G. Rimmelzwaan. Vaccines (2020).
    https://www.mdpi.com/2076-393X/8/3/451
  • Virus–Host Cell Interplay during Hepatitis E Virus Infection.
    M. Wißing, Y. Brüggemann, E. Steinmann  D. Todt. Trends In Microbiology (2020).
    https://www.cell.com/trends/microbiology/fulltext/S0966-842X(20)30193-1
  • Measuring Reproducibility of Virus Meta-Genomics Analyses using Bootstrap Samples from FASTQ-Files.
    B. Saremi, M. Kohls, P. Liebig, U. Siebert  K. Jung. Bioinformatics (2020).
    https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btaa926/5948992
  • Adaptive Immunity to Dengue Virus: Slippery Slope or Solid Ground for Rational Vaccine Design?.
    L. Wilken, G. Rimmelzwaan. Pathogens (2020).
    https://www.mdpi.com/2076-0817/9/6/470
  • Impact of Protein Glycosylation on the Design of Viral Vaccines.
    K. Schön, B. Lepenies, G. Goyette-Desjardins. Advances is Biochemical Engineering / Biotechnology (2020).
    https://link.springer.com/chapter/10.1007%2F10_2020_132
  • Lagovirus europeus GI.2 (rabbit hemorrhagic disease virus 2) infection in captive mountain hares (Lepus timidus) in Germany. M. Buehler, S. T. Jesse, H. Kueck, B. Lange, P. Koenig, W. K. Jo, A. D. M. E. Osterhaus, A. Beineke. BMC Veterinary Research (2020).                                https://bmcvetres.biomedcentral.com/articles/10.1186/s12917-020-02386-4

  • Rift Valley fever virus detection in susceptible hosts with special emphasis in insects. K. M. Gregor, L. M. Michaely, B. Gutjahr, M. Rissmann, M. Keller, S. Dornbusch, F. Naccache, K. Schön, S. Jansen, A. Heitmann, R. König, B. Brennan, R. M. Elliott, S. Becker, M. Eiden, I. Spitzbarth, W. Baumgärtner, C. Puff, R. Ulrich & M. H. Groschup. Scientific Reports (2021). https://www.nature.com/articles/s41598-021-89226-z

  • Reverse genetics systems for contemporary isolates of respiratory syncytial virus enable rapid evaluation of antibody escape mutants.
    W. K. Jo, A. Schadenhofer, A. Habierski, F. K. Kaiser, G. Saletti, T. Ganzenmueller, E. Hage, S. Haid, T. Pietschmann, G. Hansen, T. F. Schulz, G. Rimmelzwaan, A. D. M. E. Osterhaus & M. Ludlow. PNAS (2021).
    https://www.pnas.org/content/118/14/e2026558118.long
  • Enteric Ganglioneuritis, a Common Feature in a Subcutaneous TBEV Murine Infection Model.
    M. Boelke, C. Puff, K. Becker, F. Hellhammer, F. Gusmag, H. Marks, K. Liebig, K. Stiasny, G. Dobler, W. Baumgärtner, C. Schulz & S. C. Becker. Microorganisms (2021).
    https://www.mdpi.com/2076-2607/9/4/875

  • A resampling strategy for studying robustness in virus detection pipelines.
    Kohls, M., Saremi, B., Muchsin, I., Fischer, N., Becher, P., & Jung, K. Computational Biology and Chemistry (2021).
    https://www.sciencedirect.com/science/article/abs/pii/S1476927121001225
  • Clinical Course of Infection and Cross-Species Detection of Equine Parvovirus-Hepatitis.
    B. Reinecke, M. Klöhn, Y. Brüggemann, V. Kinast, D. Todt, A. Stang, M. Badenhorst, K. Koeppel, A. Guthrie, U. Groner, C. Puff, M. de le Roi, W. Baumgärtner, J.-M. V. Cavalleri & E. Steinmann. Viruses (2021).
    https://www.mdpi.com/1999-4915/13/8/1454
  • Comparison of merging strategies for builidng machine learning models on multiple independent gene expression data sets. J. Krepel, M. Kircher, M. Kohls and K. Jung. Statistical Analysis and Data Mining (2021). https://onlinelibrary.wiley.com/doi/full/10.1002/sam.11549

  • Mammals Preferred: Reassortment of Batai and Bunyamwera orthobunyavirus Occurs in Mammalian but Not Insect Cells. A. Heitmann, F. Gusmag, M. G. Rathjens, M. Maurer, K. Frankze, S. Schicht, S. Jansen, J. Schmidt-Chanasit, K. Jung and S. C. Becker. Viruses (2021). https://www.mdpi.com/1999-4915/13/9/1702

  • Sequential MAVS and MyD88/TRIF signaling triggers anti-viral responses of tick-borne encephalitis virus-infected murine astrocytes. L. Ghita, V. Breitkopf. F. Mulenge, A. Pavlou, O. L. Gern, V. Durán, C. K. Prajeeth, M. Kohls, K. Jung, M. Stangel, I. Steffen, U. Kalinke. Journal of Neuroscience Research (2021). https://onlinelibrary.wiley.com/doi/10.1002/jnr.24923

  • Swinepox Virus Strains Isolated from Domestic Pigs and Wild
    Boar in Germany Display Altered Coding Capacity in the
    Terminal Genome Region Encoding for Species-Specific Genes.
    F. K. Kaiser, A. Wiedemann, B. Kühl, L. Menke, A. Beineke, W. Baumgärtner, P. Wohlsein, K. Rigbers, P. Becher, M. Peters, A. D. M. E. Osterhaus & Martin Ludlow. Viruses (2021). https://www.mdpi.com/1999-4915/13/10/2038

  • Toll-like Receptors in Viral Encephalitis. O. L. Gern, F. Mulenge, A. Pavlou, L. Ghita, I. Steffen, M. Stangel and U. Kalinke. Viruses (2021). https://www.mdpi.com/1999-4915/13/10/2065

Contributing VIPER students are highlighted in italics.

VIPER related publications

  • Genetic variability of porcine pegivirus in pigs from Europe and China and insights into tissue tropism.
    J. Kennedy, V. Pfankuche, D. Hoeltig, A. Postel, O. Keuling, M. Ciurkiewicz, W. Baumgärtner, P. Becher, C. Baechlein. Scientific Reports (2019).
    https://www.nature.com/articles/s41598-019-44642-0
  • Robust hepatitis E virus infection and transcriptional response in human hepatocytes.
    D. Todt, M. Friesland, N. Moeller, D. Praditya, V. Kinast, Y. Brüggemann, L. Knegendorf, T. Burkarda, J. Steinmann, R. Burm, L. Verhoye, A. Wahid, T. Meister, M. Engelmann, V. Pfankuche, C. Puff, F. Vondran, W. Baumgärtner, P. Meuleman, P. Behrendt, E. Steinmann. PNAS (2020).
    https://www.pnas.org/content/117/3/1731
  • Oxidative stress in canine histiocytic sarcoma cells induced by an infection with Canine Distemper Virus led to a dysregulation of HIF‐1α downstream pathway resulting in a reduced expression of VEGF‐B in vitro.
    F. Armando, M. Gambini, A. Corradi, C. Giudice, V. Pfankuche, G. Brogden, F. Attig, M. von Köckritz‐Blickwede, W. Baumgärtner, C. Puff. Viruses (2020).
    https://www.mdpi.com/1999-4915/12/2/200
  • Immunity to TBEV Related Flaviviruses with Reduced Pathogenicity Protects Mice from disease but not from TBEV Entry into the CNS. 
    Petry M, Palus M, Leitzen E, Mitterreiter JG, Huang B, Kröger A, Verjans GMGM, Baumgärtner W, Rimmelzwaan GF, Růžek D, Osterhaus A, Prajeeth CK. Vaccines (2021)
    https://www.mdpi.com/2076-393X/9/3/196
  • COVID-19 vaccination and critical care capacity: Perilous months ahead.
    Reperant LA, Osterhaus ADME. Vaccine (2021)
    https://www.sciencedirect.com/science/article/pii/S0264410X21003169

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