Research

Funding: DBU, CULT-Stiftung, 81.550 EUR

Project Details:
This project serves the long-term purpose of protecting the species of the yellow-bellied toad, Bombina variegata, which is highly endangered in Germany and Central Europe. In many areas, the yellow-bellied toad only occurs in secondary, i.e. anthropogenically modified, habitats such as quarries. The populations are often isolated, too small, and suffer from inbreeding and genetic impoverishment. Previous studies have also shown that yellow-bellied toads use different life cycle strategies in different habitats. These differences suggest that the species has adapted to local ecological conditions, and these adaptations are potentially manifested in the genome. The project aims to improve the genetic and ecological information available about the species in order to make practical conservation more effective. For this purpose, DNA samples from German, French and Swiss yellow-bellied toad populations, which have already been sampled in previous projects, are examined using genomic methods (RADSeq). In addition, toads in Germany will be sampled in the few natural habitats where they still occur. The genomic results are then correlated with ecological data (habitat type, local climate). The results provide evidence as to whether yellow-bellied toads are adapted to their local habitat (anthropogenic vs. natural) or to their local climate at the molecular level. The aim is to identify specific candidate genes that mediate this local adaptation. Furthermore, species distribution models based on climatic data should show where suitable habitats are for the yellow-bellied toad today and in the future - also with a view on climate change. The results obtained will be discussed with scientists and species protection specialists in a workshop. In follow-up projects, so-called genetic rescue will be used for small, isolated occurrences to stabilize them, and larger populations will be genetically upgraded. Genetic rescue projects based on genomic information are innovative since so far they have been successfully implemented in species protection in only a few countries.

Cooperation Partners:

Prof. Jean-Paul Léna, Dr. Hugo Cayuela, Benjamin Monod-Broca, University of Lyon;

Dr. Mirjam Nadjafzadeh, NABU Niedersachsen; Fabian Droppelmann, Chance 7

Project Details:
Stable and consistent individual behavioral variations in animals that are generally regarded as an expression of animal personalities, and might be important drivers of ecological specialization and the evolutionary adaptive potential of species. We aim to investigate various proximate factors driving individual variations in risk-taking behavior of the grey mouse lemur (Microcebus murinus) as well as their relationship and explanatory value for physical cognitive performance. In the wild, this species lives under a very high predation pressure and risk taking decisions must therefore be taken on a daily basis and should be an important key to survival. We will study captive grey mouse lemurs with a longitudinal approach to investigate systematically the individual behavioral dynamics across time and different risk contexts. In a second step, personality differences will then be compared with the results from a test battery in the physical cognitive domain. Our findings will contribute to a better understanding of risk taking as one facet of animal personality in one of the world?s smallest primates.

Project Details:
The monitoring and evaluation of emotions in animals is of increasing interest due to the public awareness on anima, welfare but also because laboratory animals serve as model species for the development of psychological drugs. The reliable evaluation of emotions is still a scientific challenge, as emotions are not only the result of automatic physiological reactions, but also underline cognitive evaluation processes (Kalat & Shiota, 2007). Thus, the emotional perception of a situation can depend on individual personality or experience. In order to be able to assess animal welfare, it is important to develop reliable methods for recording the emotional state of an animal. Although it is possible to determine an animal's condition using physiological measurements (e.g. blood sampling, implants to measure the heart rate), these measures are invasive and do not provide any information about the emotional valence of the condition (an increased heart rate occurs with both negative and positive emotions). An alternative is offered by behavioural tests that can be used to test the personality of animals as well as the emotional cognitive evaluation of a situation. One way of testing cognitive judgement is the ?Judgement Bias Task?. The animal learns to distinguish between a positive and a less positive stimulus and to react accordingly. They are then presented with an unknown ambivalent stimulus. Their reaction makes it possible to assess whether an animal is ?optimistic? (selects as with a positive stimulus) or ?pessimistic? (selects as with a positive stimulus). These findings will allow a better assessment of emotions in animals and can later be used to investigate the impact of different housing conditions, environmental enrichment or pharmacological effects on an animal's emotions.

Funding: DAAD, 24.705 EUR

Project Details:
Aposematism and crypsis are contrasting antipredator strategies. In the color polymorphic Oophaga pumilio, phylogenetic analyses have shown that populations with cryptic and aposematic coloration might have evolved independently in different islands. Two other species, O. granulifera and O. vicentei also display cryptic and aposematic color morphs in geographically isolated populations. Particularly, phylogenetic analyses of the evolution of these contrasting antipredator strategies can improve our understanding on the evolution of polymorphism in aposematic species. This project aims to uncover the molecular signatures of selection present in the genes of three Oophaga species that experienced independently evolved cryptic and aposematic phenotypes. To this effect, we look forward to elucidate the phylogenetic relationships of the genus and quantify the variation in gene expression and allelic frequencies using state-of-the-art methods.

Cooperation Partners:

Dr. Evan Towney, Goethe Universität Frankfurt, Biologicum

Project Details:
With Alexa, Siri and Cortana, voice recognition and control software has become an integral part of our everyday lives. Animal voices also contain a huge number of information about the sender animal, such as species, identity, gender, age, body size, emotional state, diseases and hormone status. Bioacoustics therefore enables the development of non-invasive, time- and cost-efficient, automatic bioacoustic monitoring systems for animals. For this purpose, microphones can be installed recording animals' vocalisations around the clock without disturbing or influencing them. The recordings can be automatically analysed using mathematical algorithms to extract specific information. In addition, psychoacoustic tools can be used to elicit specific positive behaviours. Such bioacoustic tools can be used for clarification of taxonomic questions, to monitor wildlife as well as to improve animal husbandry and thus play an increasingly important role in species conservation and animal management. The aim of this project is to explore the wide range of possible applications and to develop bioacoustic monitoring systems for species conservation and animal management.

Results:

van Elst T, Sgarlata GM, Schüßler D, Tiley GP, Poelstra JW, Scheumann M, Blanco MB, Aleixo-Pais IG, Rina Evasoa M, Ganzhorn JU, Goodman SM, Hasiniaina AF, Hending D, Hohenlohe PA, Ibouroi MT, Iribar A, Jan F, Kappeler PM, Le Pors B, Manzi S, Olivieri G, Rakotonanahary AN, Rakotondranary SJ, Rakotondravony R, Ralison JM, Ranaivoarisoa JF, Randrianambinina B, Rasoloarison RM, Rasoloharijaona S, Rasolondraibe E, Teixeira H, Zaonarivelo JR, Louis EE, Yoder AD, Chikhi L, Radespiel U, Salmona J (2025). Integrative taxonomy clarifies the evolution of a cryptic primate clade. Nature Ecology & Evolution, 9(1), 57-72. DOI:10.1038/s41559-024-02547-w.

 

Heseker P, Bergmann T, Liebolt M-A, Traulsen I, Kemper N, Probst J, Scheumann M (2024a). Exposing tail biters by automatic scream detection. Smart Agricultural Technology, 9. DOI:10.1016/j.atech.2024.100582.

 

Heseker P, Bergmann T, Scheumann M, Traulsen I, Kemper N, Probst J (2024b). Detecting tail biters by monitoring pig screams in weaning pigs. Scientific Report, 14(1), 4523. DOI:10.1038/s41598-024-55336-7.

 

Pfannerstill V, Balkenhol N, Bennitt E, Maboga O, Scheumann M (2023a). Assessing the potential of conspecific playbacks as a post-translocation management tool for white rhinoceros. Conservation Science and Practice, 5(9), e12996. DOI:10.1111/csp2.12996.

 

Hasiniaina AF, Radespiel U, Kessler SE, Evasoa MR, Rasoloharijaona S, Randrianambinina B, Zimmermann E+, Schmidt S, Scheumann M+ (2020). Evolutionary significance of the variation in acoustic communication of a cryptic nocturnal primate radiation (Microcebus spp.). Ecology and Evolution, 10(8), 3784-3797. DOI:10.1002/ece3.6177; + shared senior authorship

Funding: DFG, 242.660 EUR

Project Details:
Aposematism is the association between a bright warning colouration and a defence mechanism, (e.g. toxins) for avoiding predation. The genetics of colouration and toxicity in aposematic animals is still not well investigated. In this context, the diversity of alkaloids in the skin and colouration patterns linked to predator avoidance strategies in Neotropical poison frogs is an exciting opportunity to study the convergence of ecological adaptation. Poison frogs differ in colouration patterns and toxicity among populations and strong evidence exists that aposematism is adaptive, probably driven by predator selection. For the strawberry frog Oophaga pumilio, we were able to show that genes related to pigment metabolism (e.g. pteridinene) are differently expressed between color morphs. The next objective is to connect the structure of cells containing pigment (chromatophores), the chromatographic characterization of color pigments and alkaloids, expression patterns of genes that are involved in coloration and toxicity for three color-polymorphic, neotropical poison dart frogs of the genus Oophaga.

For our project, we will collect skin and liver samples from eight populations with either green or red colouration in Panama and Costa Rica. Together with collaborators from the University of Costa Rica, the TiHo, the University of Cambridge and STRI in Panama we will characterize the chromatophores in the skin by electron microscopy, analyse the colour pigments and toxins in the skin by gas chromatography, and will perform RNAseq analysis on dorsal skin-derived cDNA. We expect that expression levels of genes in pigment (e.g. carotenoid pathways) and alkaloid metabolism to vary among different colour morphs (red vs. green) but to be similar within colour morphs across species due to convergence. Our study will lead to a better understanding of the link between geno- and phenotypes of adaptive anti-predator strategies and illuminate the evolution of regulatory mechanisms of gene expression.

Results:

Monteiro JPC, Ibáñez R, Mantzana-Oikonomaki V, Pröhl H, Rodríguez A. 2023. Genetic diversity of Oophaga vicentei (Anura: Dendrobatidae) and taxonomic position of a remarkable color morph from Panama.Salamandra 59:347-351.

Cooperation Partners:

Dr. Giselle Tamayo, UCR, Costa Rica

Dr. Beatriz Willink, UCR, Costa Rica

Dr. Nicolas Mundy, University of Cambridge, UK

Dr. Roberto Ibañéz, STRI, Panama

Funding: Madagascar National Parks; Kölner Zoo, 132.620 EUR

Project Details:
The overall objective of this project is to understand the effects of forest fires on vegetation and wildlife dynamics in dry deciduous forests of western Madagascar and to model their long-term post-fire regeneration potential by applying a landscape approach. This study will build on the fire history of the last 35 years within Ankarafantsika National Park (ANP) derived from annually available remote sensing data. We aim to investigate the impact of different time spans since the last fire, fire severity and different fire intervals on forest integrity on the one hand, and on lemur population dynamics as one representative and enigmatic, forest-dependent, vertebrate group on the other hand. Lemurs are highly suitable study species in this respect, since they fulfill key ecosystem functions (e.g. pollination, seed dispersal, food-web interactions), and the presence of the complete lemur assemblage indicates intact forest habitats. This will allow a prognosis of the long-term regeneration potential of recently burnt areas. As such, this project will provide guidance for a sustainable conservation management in the region and beyond, and will help to identify preferable areas for forest restoration and therefore nature-based-solutions towards pressing environmental problems in Western Madagascar.

Cooperation Partners:

Dr. Harison Rabarison, University of Antananarivo, Madagascar

Dr. Hanta Razafindraibe, University of Antananarivo, Madagascar

Dr. Romule Rakotondravony, Universitity of Mahajanga, Madagascar

Dominik Schüßler, MSc, Universität Hildesheim

Funding: DFG Zi 345/27-1, 328.407 EUR

Project Details:
The aim of this project is to explore for the first time the processes underlying vocal flexibility of a highly vocal and phylogenetically basal primate across development. Previous research of our group revealed that the mouse lemur, a phylogenetically basal primate, exhibits an unexpectedly high degree of vocal flexibility in early ontogeny, which decreases in further development. Our project proposes three different and interrelated work packages by which we will address major components of these unexplored processes. The presence and role of babbling and vocal turn-taking during development, as well as potential determinants, modifying vocal output during development, will be assessed by early and dense sampling of vocal production and standardized bioacoustic and videografic behavioral approaches, using a dataset of 26 developing infants and their 13 mothers. Machine learning, including deep neural network approaches, will be applied to investigate the extent to which the dynamics of vocal development and potential rules can be assessed automatically. Excised larynx experiments and related anatomical and MicroCT-studies of the vocal tract as well as high-speed videorecordings of mouth and tongue movements during vocal production will be performed to uncover the mechanics of vocal production and potential biomechanical constraints in vocal flexibility. Integrating of datasets will allow the validation of the respective methods. The project provides an important empirical basis for comparative research on mammalian vocal communication and contributes to unravel the evolutionary roots of vocal flexibility in primate communication as an important building block for the evolution of human speech and language.

Results:

e.g.,

 

Langehennig-Peristenidou A, Scheumann M (2024). Sex differences in the impact of social relationships on individual vocal signatures in grey mouse lemurs (Microcebus murinus). Philosophical Transaction of the Royal Society B, 379, 20230193. DOI:10.1098/rstb.2023.0193.

 

Langehennig-Peristenidou, A.; Romero-Mujalli, D.; Bergmann, T.; Scheumann, M. (2023). Features of animal babbling in the vocal ontogeny of the gray mouse lemur (Microcebus murinus). Scientific reports, 13(1), 21384.

 

Romero-Mujalli, D.; Bergmann, T.; Zimmermann, A.; & Scheumann, M. (2021). Utilizing DeepSqueak for automatic detection and classification of mammalian vocalizations: a case study on primate vocalizations. Scientific reports, 11(1), 1-15.

 

Scheumann, M.; Linn, S.; Zimmermann, E. (2017). Vocal greeting during mother-infant reunions in a nocturnal primate, the gray mouse lemur (Microcebus murinus). Scientific Reports 7: 10321. DOI: 10.1038/s41598-017-10417-8.

Cooperation Partners:

Prof. Coen Elemans (Institute of Biology, University of Southern Denmark, Odense, Denmark)

Prof. Tecumseh Fitch and Christian Herbst, PhD (Department of Cognitive Biology, University of Vienna, Vienna, Austria)

Prof. Axel Zimmermann (University of Aalen, Aalen, Germany)

Dr. Roland Frey (Leibniz Institut für Zoo- und Wildtierforschung, Berlin, Germany)

Project Details:
A vocal repertoire contains a species-specific list of vocalizations, which are produced by the animals. These lists build the methodological and theoretical basis for a number of research questions of different disciplines. Nevertheless, there is no consensus how to establish a vocal repertoire or how to define call types. In the majority of studies, call types were established by visual classification, using spectrograms, which was supported by statistical analysis based on the measured acoustic features of a vocalization. In recent publications, more objective mathematically approaches such as supervised or unsupervised clustering algorithm were established. However, also these algorithm often require a pre-screening of the observer either because a number of expected clusters has to be determined or by the fact that the clustering result has to be proofed for their biological plausibility. Both methods can lead to an overestimation of call types especially in species with very variable vocalizations or graded call types. Thus, an acoustic variation alone is not sufficient to reflect a behavioural relevance. This also requires a context-specificity and the ability of the brain to perceive and process the acoustic variation. In this project, we aim to establish the vocal repertoires by combining the mathematical classification of the vocalizations with the behavioural contexts in which the calls were produced as well as the physical hearing abilities (e.g., hearing range, time- and frequency resolution) of the given species. We use this approach for two small-bodied mammalian species: the Mongolian gerbil, an important animal model for human hearing, and the Etruscan shrew, suggested to be a promising model for hearing in basal mammals due to its small eardrum, basal ossicles, and simple and thin cortex.

Results:

Langehennig-Peristenidou A, Felmy F, Scheumann M (2024). Graded calls of the smallest terrestrial mammal, the Etruscan shrew, living in a closed habitat. iScience, 27(12), 111297. DOI:10.1016/j.isci.2024.111297

 

Silberstein Y, Büntge J, Felmy F, Scheumann M (2024). Context or arousal? Function of drumming in Mongolian gerbils (Meriones unguiculatus). Frontiers in Zoology, 21(1), 22. DOI:10.1186/s12983-024-00542-2

 

Silberstein Y, Felmy F, Scheumann M (2023). Encoding of arousal and physical characteristics in audible and ultrasonic vocalizations of Mongolian gerbil pups testing common rules for mammals. Animals (Basel), 13(16), 2553. DOI:10.3390/ani13162553

Cooperation Partners:

Prof. Dr. A. Kral, VIANNA, Klinik und Poliklinik für Hals-, Nasen- und Ohrenheilkunde

Dr. Wiebke Konerding, VIANNA, Klinik und Poliklinik für Hals-, Nasen- und Ohrenheilkunde

Project Details:
Cooperation strengthens cohesion between animals and is thus a decisive factor for social systems. The present project aims to investigate how individualised relationships - reflected in different types, and amounts, of socio-positive interactions between dyads - shape the social system in a bat model, Carollia perspicillata. A first study will disclose the effects of the interacting individuals, and sex, on cooperative behaviours among bats roosting in stable groups. A second study serves to pinpoint the effect of familiarity on cooperation, using allogrooming and food begging/sharing as paradigms in a series of behavioural experiments. Differences in type, frequency, and duration of interactions, and in the concomitant vocal communication, are expected for experiments with unfamiliar individuals versus those with bats from a given roosting group. The results will contribute to a deeper understanding of how cooperation between individuals may have driven the evolution of bat sociality.

Cooperation Partners:

Prof. Dr. Gerald Kerth,, Zoology and Nature conservation, Zoologisches Institut und Museum, Universität Greifswald